Vibrio anguillarum genes presence/absence heatmap, using NB10 as ref, example with PF4-E2-R4

I used the Prokka output csv file of both NB10 and PF4-E2-R4 strains, - extracted the gene name and the position on strains chromosomes - manual curation for RNAs and transposase family genes

Using NB10 as the reference genome, I mapped the gene content of PF4-E2-R4 on each NB10 chromosome.

NB: these are interactive graphs. The name of genes will appear if your mouse is over it.

The first figure represents the presence/absence of genes in the PF4-E2-R4 strain. A white tile indicates absence of gene. The genes are colored based on the chromosomic sequence in which it was detected in PF4-E2-R4 (2 sequences were available in this assembly, one per chromosome).

The second figure also represents the presence/absence of genes in the PF4-E2-R4 strain mapped on the NB10 chromosomes, but colored according to their position in the genome of PF4-E2-R4. I thought it would be interesting to check the similarity of the two genomes like you did with lastz but with genes as input.